miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|21164201|gb|BJ485759.1|BJ485759 TCGTTCTAGNTTTTACTNCTTTGGATTNTAGGTTTAGAGAGACCACGGTCTTGGCATCAATATACCTGTTCTCACACATC
ATCATAACCTTGCAACTTCTTCTAGAATGACACCAGGAAATGACAACATTGCACCTATCATTATTTGATTTCTACTAGAA
GCAAGCTGCAGTAGAAGTTCGGCATACTCCCTCTGTCCCAAAATAAGTGTCACAAATTTATAACTAAATTAGTACAAATT
TTATACTAAATCAGCGACACTTATTTTGATACGGAGGGAGTACAAAACTATTATCTCCAGAGAAAGACATGAGGAAACTT
CGCAATGAAGAAAATCACCACTTTAGAGCCCATCATTTCTTATCCTCTCTAAGGACGACATAGTTGTGGCCGTTTGTCTT
CTGTATCTTTGAAATTTTCTTCAGAATTTCAGCGAAGGCATTCTTGTCCTCTGGACCTCGTAGTCTAGACTTAAATCTGG
ACACTAAATCTTGTGTGGTGACAGGAGCCACTGCAAGAAGAACAGTCCTGATCTCATCCTCTGTCACAGGAGATACATTG
GCACTTTTCAATGAAGCACAGGCCTTTGGTGTAGGTTTTGATGAAGCCGGTGTCTCGTCTTTGATACTTGATGTTTTTGT
ATCAGATTCCACCTTTGCTTTCTTTGAAGCTGCACCACTAGATGATTTGGCATCATCACCACCTGATTTCCTCTTTTGCT
TGGATTTCGATGCAGGAGGTGTACTACG




Most similar to sp|Q9SU25|T2FA_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9SU25|T2FA_ARATH Transcription initiation factor IIF subunit
           alpha OS=Arabidopsis thaliana GN=RAP74 PE=1 SV=1
          Length = 649

 Score =  102 bits (253), Expect = 4e-21
 Identities = 70/140 (50%), Positives = 78/140 (55%), Gaps = 12/140 (8%)
 Frame = -1

Query: 748 RSTPPASKSKQKRXXXXXXXXXXXXXXXXXXKVESDTKTSSIKDE-----------TPAS 602
           R TPPA  SK KR                  K E+D K SS+K+E           T A 
Sbjct: 404 RGTPPAKPSKGKRKLNDGDSKKPSSSVQKKVKTENDPK-SSLKEERANTVSKSNTPTKAV 462

Query: 601 SKPTPKACASLKSANVSPVTEDEIRTVLLAVAPVTTQDLVSRFKSRLRGPEDKNAFAEIL 422
                 A AS  SA   PVTEDEIR VL+    VTTQDLVSRFK+RL+  EDKNAFA IL
Sbjct: 463 KAEPASAPASSSSAATGPVTEDEIRAVLMEKKQVTTQDLVSRFKARLKTKEDKNAFANIL 522

Query: 421 KKISKIQKTNG-HNYVVLRE 365
           +KISKIQK  G  N+VVLRE
Sbjct: 523 RKISKIQKNAGSQNFVVLRE 542